PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G21750.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 1258aa    MW: 136894 Da    PI: 6.7117
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G21750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.5e-0612381257525
                       --SGGGGTS--TTTTT-SS-S CS
          zf-CCCH    5 lCrffartGtCkyGdrCkFaH 25  
                       +Cr ++++G+C+ G +C+F H
  ONIVA04G21750.1 1238 ICR-YYENGYCRKGTSCQFLH 1257
                       799.6666************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007192.1E-3767163IPR004343Plus-3 domain
PROSITE profilePS5136015.49367186IPR004343Plus-3 domain
SuperFamilySSF1590421.19E-2367179IPR004343Plus-3 domain
PfamPF031262.4E-1272151IPR004343Plus-3 domain
SuperFamilySSF552771.96E-14314372IPR003169GYF domain
PROSITE profilePS5082914.216317369IPR003169GYF domain
SMARTSM004446.0E-12318371IPR003169GYF domain
Gene3DG3DSA:3.30.1490.408.6E-15319372IPR003169GYF domain
PfamPF022135.9E-9320361IPR003169GYF domain
PROSITE profilePS5010313.73212331258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-512361257IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-512381257IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034968Biological Processhistone lysine methylation
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1258 aa     Download sequence    Send to blast
MLKLLEMHFH AKETVNGDGQ KGIDSDSAQI DSGGYSDMPS KLCSDNKRKI HKKIERESPA  60
NLEDYAAIDM HNINLIYLRR SLLEDLIDDN GTFSDKITGA FVRIRTPCVG QKQDIYRLVK  120
VLGTHKVAER YSVGKKTTDH ALEILNLDKK EEECKRLRQS MKCGLITRLK VGDIHEKAKI  180
FQLLRVNDWL ENEKQRLSHL RDRAKKLQLL GTPEERARII NEDPEVHADP CMSPDYESAE  240
ELDAKKAVDS TSRNGSDLLF LGRKGIETNS LQNHRQNCSA TSHHTTTSPP TEGMTHGQGE  300
EASFASSEIV SGDMEPEKVW HYKDPSGSVQ GPFTLLQLSK WAAYFPRDLR IWLTFESEQN  360
SLLLNEVLSK QQKDFIQPSP KVDNNRSTWE GVGQDRVDSS LTGNNSSSPI GYNVIYSSRL  420
PSPSADYRAS AREGPNLPSG TLPFMTSQKT QKDPQMLHGQ AQHQGDYSCT IPSSVVSYRP  480
AGSHDEWPPR GNIGEWNNSQ DSGGMWSPTT PHMSRSNLEH QPDRCITKKQ LQNDSKRNTL  540
AGSAENLNSQ MDFGSQKVHI PTPQQPERDL ATSVGTSRQF EFKTCHQEGS HWSSTADSIT  600
HDGLQLSLAS AKPESCSAVN PIRDGDSSSA SRVPNQSGAH VYSPPHPATT NLSKSEETMN  660
QCKSCEPEAS NKSRKPDASH APVNQHPKPE SDPVLPDTQD FERTHPSPST EHDTKEQLKD  720
QSRSTSVAPE GSGTKAHGQS SIAFISEASG PLSSKIVGLQ PPKDTSFLVE RDIKDGGSIT  780
QTEQQKEEST AFKKENVAVD PISDSEAIVS GVLESLTETY NLHEETALEN FTPTSAEEEQ  840
PQCSTPIALS PWDETSDYQG EAVDSALWGV QDDQNNEMWS LSSPTPTLQP SGIGADTKGA  900
SCAIEEVIVA QGNSGVVEPS PALEKKRIEK VPSASIDRGV PEQVKPKSDA ALSPEESRKP  960
SGLQLSSTYL QGSTKSSGLP PSGTSLDGGI EPSGLLPSGT SLEWGTKISG VQSSASSLEG  1020
SKKAFVRQPS GSSLEGNTKA SGRQPSGSSI EGSKKPSDRQ PSGASQEGNT KPSGWQQSVS  1080
SLEGGTKPSG WKPSISIDTN TKASGSSKAS GWQPSPRESS KSKPNSTWGA GQSRNSSSHQ  1140
STTPTAKYSS ETPRRQGNNN TNSAGWGDSL GNKSWHSPSG NASSRGSHSS HHHDRHNQSS  1200
EPWRGGSNHS RRSDHRQEHG NGGSSRSSSS RGQSQRGICR YYENGYCRKG TSCQFLHR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614387.10.0PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2
TrEMBLA0A0E0H4Z50.0A0A0E0H4Z5_ORYNI; Uncharacterized protein
STRINGBGIOSGA033267-PA0.0(Oryza sativa Indica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.12e-69DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding